Erik Hjerde
Research scientist, Molecular Biosystems and Bioinformatics, Norstruct
Job description
Assoiated with the european ELIXIR project. In Norway, the project is coordinated by the University of Bergen and includes the Universities in Oslo, Trondheim, Tromsø and Ås. On a national level we aim to:
- to build a Norwegian Node in the pan-European research infrastructure ELIXIR (www.elixir-europe.org), with the Node delivering services and resources to the international community through ELIXIR on selected areas;
- to continue a National help desk serving users a broader set of services and assistance; and
- to provide an e-infrastructure allowing users to efficiently and safely store, share, analyse and publish their genomics scale data.
Ahmed Bargheet,
Claus Andreas Klingenberg,
Eirin Esaiassen,
Erik Hjerde,
Jorunn Pauline Cavanagh,
Johan Bengtsson-Palme
et al.:
Development of early life gut resistome and mobilome across gestational ages and microbiota-modifying treatments
Animesh Kumar,
Espen Mikal Robertsen,
Nils Peder Willassen,
Juan Fu,
Erik Hjerde
:
Comparative analysis of HiSeq3000 and BGISEQ-500 sequencing platform with shotgun metagenomic sequencing data
Aitana Neves,
Isabel Cuesta,
Erik Hjerde,
Terje Klemetsen,
David Salgado,
Jacques van Helden
et al.:
FAIR+E pathogen data for surveillance and research: lessons from COVID-19
Kenneth Lindstedt,
Dorota Julia Buczek,
Torunn Annie Pedersen,
Erik Hjerde,
Niclas Peter Raffelsberger,
Yutaka Suzuki
et al.:
Detection of Klebsiella pneumoniae human gut carriage: a comparison of culture, qPCR, and whole metagenomic sequencing methods
Amudha Deepalakshmi Maharajan,
Erik Hjerde,
Hilde Hansen,
Nils P Willassen
:
Quorum Sensing Controls the CRISPR and Type VI Secretion Systems in Aliivibrio wodanis 06/09/139
Tracy Munthali Lunde,
Erik Hjerde,
Mohammed Al-Haroni
:
Prevalence, diversity and transferability of the Tn916-Tn1545 family ICE in oral streptococci
Adriana Maria Sanabria-Moreno,
Jessin Janice James Peter,
Erik Hjerde,
Gunnar Skov Simonsen,
Anne Merethe Hanssen
:
Shotgun-metagenomics based prediction of antibiotic resistance and virulence determinants in Staphylococcus aureus from periprosthetic tissue on blood culture bottles
Adriana Maria Sanabria-Moreno,
Erik Hjerde,
Mona Johannessen,
Johanna U Ericson Sollid,
Gunnar Skov Simonsen,
Anne Merethe Hanssen
:
Shotgun-Metagenomics on Positive Blood Culture Bottles Inoculated With Prosthetic Joint Tissue: A Proof of Concept Study
Rasmus Goll,
Peter Holger Johnsen,
Erik Hjerde,
Joseph Diab,
Per Christian Valle,
Frank Hilpüsch
et al.:
Effects of fecal microbiota transplantation in subjects with irritable bowel syndrome are mirrored by changes in gut microbiome
Miriam Khider,
Hilde Hansen,
Erik Hjerde,
Jostein a Johansen,
Nils Peder Willassen
:
Exploring the transcriptome of luxI-
and ΔainS mutants and the impact of N-3-oxo-hexanoyl-L- and N-3-hydroxy- decanoyl-L-homoserine lactones on biofilm formation in Aliivibrio salmonicida
Maria Pain,
Erik Hjerde,
Claus Klingenberg,
Jorunn Pauline Cavanagh
:
Comparative Genomic Analysis of Staphylococcus haemolyticus Reveals Key to Hospital Adaptation and Pathogenicity
Typhaine Le Doujet,
Concetta De Santi,
Terje Klemetsen,
Erik Hjerde,
Nils Peder Willassen,
Peik Haugen
:
Closely-related Photobacterium strains comprise the majority of bacteria in the gut of migrating Atlantic cod (Gadus morhua)
Trym Thune Flygel,
Evgeniya Sovershaeva,
Shantelle Classen-Weitz,
Erik Hjerde,
Kilaza S. Mwaikono,
Jon Øyvind Odland
et al.:
Composition of Gut Microbiota of Children and Adolescents With Perinatal Human Immunodeficiency Virus Infection Taking Antiretroviral Therapy in Zimbabwe
Miriam Khider,
Erik Hjerde,
Hilde Hansen,
Nils Peder Willassen
:
Differential expression profiling of ΔlitR and ΔrpoQ mutants reveals insight into QS regulation of motility, adhesion and biofilm formation in Aliivibrio salmonicida
Jenny Johansson Söderberg,
Miriam Grgic,
Erik Hjerde,
Peik Haugen
:
Aliivibrio wodanis as a production host: development of genetic tools for expression of cold-active enzymes
Vladimir Vimberg,
Jorunn Pauline Cavanagh,
Oldrich Benada,
Olga Kofranova,
Erik Hjerde,
Leona Zieglerova
et al.:
Teicoplanin resistance in Staphylococcus haemolyticus is associated with mutations in histidine kinases VraS and WalK
Diagnostic microbiology and infectious disease 2018 DOI
Kidane M Tekle,
Sveinung Gundersen,
Kjetil Klepper,
Lars Ailo Bongo,
Inge Alexander Raknes,
Xiaxi Li
et al.:
Norwegian e-Infrastructure for Life Sciences (NeLS)
Eirin Esaiassen,
Erik Hjerde,
Jorunn Pauline Cavanagh,
Tanja Pedersen,
Jannicke Hanne Andresen,
Siren Rettedal
et al.:
Effects of Probiotic Supplementation on the Gut Microbiota and Antibiotic Resistome Development in Preterm Infants
Victoria Dominguez Del Angel,
Erik Hjerde,
Lieven Sterck,
Salvador Capella-Gutiérrez,
Cederic Notredame,
Olga Vinnere Pettersson
et al.:
Ten steps to get started in Genome Assembly and Annotation
F1000 2018 DOI
Sunniva Katharina Thode,
Cecilie Bækkedal,
Jenny Johansson Söderberg,
Erik Hjerde,
Hilde Hansen,
Peik Haugen
:
Construction of a fur null mutant and RNA-sequencing provide deeper global understanding of the Aliivibrio salmonicida Fur regulon
Eirin Esaiassen,
Erik Hjerde,
Jorunn Pauline Cavanagh,
Gunnar Skov Simonsen,
Claus Klingenberg
:
Bifidobacterium bacteremia: Clinical characteristics and a genomic approach to assess pathogenicity
Journal of Clinical Microbiology 2017 DOI
Christian Karlsen,
Erik Hjerde,
Terje Klemetsen,
Nils Peder Willassen
:
Pan genome and CRISPR analyses of the bacterial fish pathogen Moritella viscosa
M. Guillermina Casabona,
Holger Kneuper,
Daniela Alferes de Lima,
Catriona P. Harkins,
Martin Zoltner,
Erik Hjerde
et al.:
Haem-iron plays a key role in the regulation of the ess/type VII secretion system of staphylococcus aureus RN6390
Microbiology (Reading) 2017 DOI
Adele Kim Williamson,
Erik Hjerde,
Tim Kahlke
:
Analysis of the distribution and evolution of the ATP-dependent DNA ligases of bacteria delineates a distinct phylogenetic group 'Lig E'
Molecular Microbiology 2016 DOI
Adele Kim Williamson,
Concetta De Santi,
Bjørn Altermark,
Christian Karlsen,
Erik Hjerde
:
Complete genome sequence of Halomonas sp. R5-57
Alexander Kashulin,
Henning Sørum,
Erik Hjerde,
Nils Peder Willassen
:
IS elements in Aliivibrio salmonicida LFI1238: Occurrence, variability and impact on adaptability
Gene 2015 DOI
Erik Hjerde,
Christian Karlsen,
Henning Sørum,
Julian Parkhill,
Nils Peder Willassen,
Nicholas R. Thomson
:
Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis
Kåre Olav Holm,
Kristina Nilsson,
Erik Hjerde,
Nils Peder Willassen,
Debra L Milton
:
Complete genome sequence of Vibrio anguillarum strain NB10, a virulent isolate from the Gulf of Bothnia
Gro Elin Kjæreng Bjerga,
Erik Hjerde,
Concetta De Santi,
Adele Kim Williamson,
Arne O. Smalås,
Nils Peder Willassen
et al.:
High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway
Jorunn Pauline Cavanagh,
Erik Hjerde,
Matthew T.G. Holden,
Tim Kahlke,
Claus Klingenberg,
Trond Flægstad
et al.:
Whole-genome sequencing reveals clonal expansion of multiresistant Staphylococcus heamolyticus in European hopsitals
Erik Hjerde,
Marcin Miroslaw Pierechod,
Adele Kim Williamson,
Gro Elin Kjæreng Bjerga,
Nils Peder Willassen,
Arne O. Smalås
et al.:
Draft Genome Sequence of the Actinomycete Rhodococcus sp. Strain AW25M09, Isolated from the Hadsel Fjord, Northern Norway
Microbiology Resource Announcements (MRA) 07. March 2013 DOI
Eva katrin Bjørkeng,
Erik Hjerde,
Torunn Pedersen,
Arnfinn Sundsfjord,
Kristin Hegstad
:
ICESluvan, a 94-Kilobase Mosaic Integrative Conjugative Element Conferring Interspecies Transfer of VanB-Type Glycopeptide Resistance, a Novel Bacitracin Resistance Locus, and a ToxinAntitoxin Stabilization System
Bryndis Bjornsdottir,
Erik Hjerde,
Birkir Th. Bragason,
Thorunn Gudmundsdottir,
Nils Peder Willassen,
Bjarnheidur Gudmundsdottir
:
Identification of type VI secretion systems in Moritella viscosa
Veterinary Microbiology 2012 DOI
Kristoffer Lindell,
Anna Fahlgren,
Erik Hjerde,
Nils Peder Willassen,
Maria Fällman,
Debra L Milton
:
Lipopolysaccharide O-Antigen Prevents Phagocytosis of Vibrio anguillarum by Rainbow Trout (Oncorhynchus mykiss) Skin Epithelial Cells
Tim Kahlke,
Alexander Goesmann,
Erik Hjerde,
Nils Peder Willassen,
Peik Haugen
:
Unique core genomes of the bacterial family vibrionaceae: insights into niche adaptation and speciation
Geir Åsmund Hansen,
Rafi Ahmad,
erik Hjerde,
Christopher Graham Fenton,
Nils Peder Willassen,
Peik Haugen
:
Expression profiling reveals Spot 42 small RNA as a key regulator in the central metabolism of Aliivibrio salmonicida
Rafi Ahmad,
Geir Åsmund Hansen,
Hilde Hansen,
Erik Hjerde,
hege lynum Pedersen,
steinar Paulsen
et al.:
Prediction, microarray and northern blot analyses identify new intergenic small RNAs in aliivibrio salmonicida
Journal of Molecular Microbiology and Biotechnology 28. December 2012 DOI
Barbara Weber,
Kristoffer Lindell,
Samir El Qaidi,
erik Hjerde,
Nils P Willassen,
Debra L Milton
:
The phosphotransferase VanU represses expression of four qrr genes antagonizing VanO-mediated quorum-sensing regulation in Vibrio anguillarum
Microbiology (Reading) 2011 DOI
hege lynum Pedersen,
erik Hjerde,
steinar Paulsen,
Hilde Hansen,
Lotte Olsen,
Sunniva Katharina Thode
et al.:
Global responses of Aliivibrio salmonicida to hydrogen peroxide as revealed by microarray analysis
Marine Genomics 2010 DOI
Korbinian Bösl,
Federico Bianchini,
Nazeefa Fatima,
Pedram A Keyvani,
Siri Kalhovd,
Kidane M Tekle
et al.:
End-to-end data management tool assembly for Norwegian life scientist
Korbinian Bösl,
Erik Hjerde,
Lars Figenschou,
erik axel Vollan,
Nils Peder Willassen
:
Workshop in Data Management for Life Science projects
2020 FULLTEKST
Korbinian Bösl,
Fatemeh Ghavidel,
Kidane M Tekle,
Rune Kleppe,
Erik Hjerde,
Finn Drabløs
et al.:
End-to-End Data Management Toolkit for Norwegian Life Scientists
2020 FULLTEKST
Adriana Maria Sanabria-Moreno,
Gunnar Skov Simonsen,
Mona Johannessen,
Johanna U Ericson Sollid,
Erik Hjerde,
Anne Merethe Hanssen
:
Metagenomics on prosthetic joint tissue samples inoculated in blood culture bottles: a proof of concept study
2019
Adriana Maria Sanabria-Moreno,
Gunnar Skov Simonsen,
Johanna U Ericson Sollid,
Mona Johannessen,
Anne Merethe Hanssen,
Erik Hjerde
:
Metagenomics on prosthetic joint tissue samples inoculated in blood culture bottles
2019
Adele Kim Williamson,
Erik Hjerde,
Aili Sarre,
Ingar Leiros,
Kristel Berg,
Hanna-Kirsti S. Leiros
:
Discovery and design of novel DNA ligases for biotechnology
2018
Adele Kim Williamson,
Erik Hjerde,
Hanna-Kirsti S. Leiros,
Kjersti Lian,
Miguel A. Ramirez,
Wayne M. Patrick
:
Beyond T4: discovery and design of DNA ligases for use in biotechnological applications
2017
Eirin Esaiassen,
Pauline Cavanagh,
Erik Hjerde,
Gunnar Skov Simonsen,
Ragnhild Støen,
Claus Klingenberg
:
Bifidobacterium longum subspecies infantis bacteremia in 3 extremely preterm infants receiving probiotics
Emerging Infectious Diseases 2016 DOI
Adele Kim Williamson,
Hanna-Kirsti S. Leiros,
Erik Hjerde,
Kjersti Lian,
Miguel A. Ramirez,
Wayne M. Patrick
:
Beyond T4: discovery and design of DNA ligases for use in biotechnological applications
2016
Adele Kim Williamson,
Tim Kahlke,
Erik Hjerde,
Hanna-Kirsti S. Leiros
:
Structural and Bioinformatic Studies of the ‘Lig E’Group of Bacterial ATP-Dependent DNA Ligases
2016
hege lynum Pedersen,
Bjørn Altermark,
Erik Hjerde,
Adele Kim Williamson,
Marcin Miroslaw Pierechod,
Gro Elin Kjæreng Bjerga
et al.:
Genome Sequencing of Bacteria Isolated from the Arctic Marine Environment
2013
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