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Bilde av Hsieh, Yin-Chen
Bilde av Hsieh, Yin-Chen
Department of Arctic and Marine Biology hsieh.y.chen@uit.no +4777644926 You can find me here

Yin-Chen Hsieh

PhD Candidate

Job description

I am a PhD candidate in bioinformatics, with focus on protein sequences and protein structure prediction via statistical modeling and machine learning methods.

  • Yin-Chen Hsieh, Marc Delarue, Henri Orland, Patrice Koehl :
    Analyzing the Geometry and Dynamics of Viral Structures: A Review of Computational Approaches Based on Alpha Shape Theory, Normal Mode Analysis, and Poisson–Boltzmann Theories
    Viruses 2023 ARKIV / DOI
  • Suraj Sharma, Yin-Chen Hsieh, Jørn Dietze, Mathias Bockwoldt, Øyvind Strømland, Mathias Ziegler et al.:
    Early Evolutionary Selection of NAD Biosynthesis Pathway in Bacteria
    Metabolites 2022 ARKIV / DOI
  • Federico Martinez-Seidel, Yin-Chen Hsieh, Dirk Walther, Joachim Kopka, Alexandre Augusto Pereira Firmino :
    COSNeti: ComplexOme-Structural Network Interpreter used to study spatial enrichment in metazoan ribosomes
    BMC Bioinformatics 2021 ARKIV / DOI
  • Elizabeth Chou, Yin-Chen Hsieh, Sabrina Enriquez, Fushing Hsieh :
    Evaluating reliability of tree-patterns in extreme-K categorical samples problems
    Journal of Statistical Computation and Simulation 2021 DOI
  • Federico Martinez-Seidel, Olga Beine‐golovchuk, Yin-Chen Hsieh, Kheloud El Eshraky, Michal Gorka, Bo-Eng Cheong et al.:
    Spatially enriched paralog rearrangements argue functionally diverse ribosomes arise during cold acclimation in arabidopsis
    International Journal of Molecular Sciences 2021 ARKIV / DOI
  • Federico Martinez-Seidel, Olga Beine-Golovchuk, Yin-Chen Hsieh, Joachim Kopka :
    Systematic review of plant ribosome heterogeneity and specialization
    Frontiers in Plant Science 2020 DOI
  • Yin-Chen Hsieh, Frédéric Poitevin, Marc Delarue, Patrice Koehl :
    Comparative Normal Mode Analysis of the Dynamics of DENV and ZIKV Capsids
    Frontiers in Molecular Biosciences 2016 DOI

    • The 50 latest publications is shown on this page. See all publications in Cristin here →

    Research interests

    • protein-protein interaction
    • protein coevolution
    • neural network protein structural prediction
    • mTOR signaling pathway

    Teaching

    Bio-2018: Genetikk, molekylærbiologi og bioinformatikk

    Bio-3027/8027: Scientific Programming with Python in the life sciences 

    Bio-3018: Environmental Molecular Genetics 


    Member of research group

    Microorganisms and Plants   English content Bioinformatics and Systems Biology   English content

    Member of project

    'Protein-protein' interactions

    CV

    (Since 2020)

    PhD Candidate

    UiT the Arctic University of Norway

    (2019)

    Research assistant

    Max Planck Institute of Plant Physiology, Potsdam-Golm

    (2017 - 2019)

    MSc Bioinformatics

    Wageningen University & Research

    (2013 - 2016)

    BSc Mathematics

    University of Amsterdam / Vrije Universiteit