Photo: Kaja Alexandra Halvei-Larsen
Jakob Peder Pettersen
Job description
Jakob Peder Pettersen is a Postdoctorial Research Fellow at Centre for New Antibacterial Strategies (CANS) and part of Health Data Lab at the Department of Computer Science (IFI). His field of expertice is within systems biologi where he works on large-scale analysis of biological datasets and development of modeling tools.
Jakob Peder Pettersen,
Sandra Castillo,
Paula Jouhten,
Eivind Almaas
:
Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts
Jakob Peder Pettersen,
Eivind Almaas
:
Parameter inference for enzyme and temperature constrained genome-scale models
Jakob Peder Pettersen,
Eivind Almaas
:
csdR, an R package for differential co-expression analysis
Jakob Peder Pettersen,
Madeleine S. Gundersen,
Eivind Almaas
:
Robust bacterial co-occurence community structures are independent of r- and K-selection history
Jakob Peder Pettersen
:
Type-stable heterogeneous arrays
03. October 2025
Jakob Peder Pettersen,
Einar Holsbø
:
Efficient and reproducible bioinformatic pipelines for single cell bacterial transcriptomics
2025
Jakob Peder Pettersen,
Eivind Almaas
:
What Are Enzyme and Temperature Dependent Genome-Scale Models (etcGEMs) and How Do They Behave?
2022
Jakob Peder Pettersen,
Olav Vadstein,
Eivind Almaas
:
What do co-occurence network actually tell us? A case study.
2020
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Research interests
- Bioinformatics pipelines for prokaryotic single cell RNA-seq
- Genome-scale metabolic modeling. This includes Flux Balanse Analysis (FBA) with extensions (etcFBA, dFBA).
- Microbial ecology
- Inference of correlation network
- Integration of units of meaturements into differential equation solvers with minimal overhead
CV
See my profile on LinkedIn.