Jukka Ilmari Corander
Rebecca Ashley Gladstone,
Maiju Pesonen,
Anna Kaarina Pöntinen,
Tommi Mäklin,
Neil Zhang Nian Zhong MacAlasdair,
Harry Thorpe
et al.:
Identification of transporter-dependent capsular loci associated with the invasive potential of Escherichia coli
Paul Blomstedt,
Diego Mesquita,
Omar Rivasplata,
Jarno Lintusaari,
Tuomas Sivula,
Jukka Corander
et al.:
Meta-Analysis of Bayesian Analyses
Theodor Anton Ross,
Anna Kaarina Pöntinen,
Einar Holsbø,
Ørjan Samuelsen,
Kristin Hegstad,
Michael Kampffmeyer
et al.:
Machine learning-based lineage prediction from antimicrobial susceptibility testing phenotypes for Escherichia coli sequence type 131 clade C surveillance across infection types
Marjorie J. Gibbon,
Natacha Couto,
Keira Cozens,
Samia Habib,
Lauren Cowley,
David M. Aanensen
et al.:
Convergence and global molecular epidemiology of Klebsiella pneumoniae plasmids harbouring the iuc3 virulence locus: a population genomic analysis
Lewis W.S. Fisher,
Harry Thorpe,
Davide Sassera,
Jukka Corander,
Josephine M. Bryant
:
High frequency body site translocation of nosocomial Pseudomonas aeruginosa
Fanni Ojala,
Henri Pesonen,
Rebecca Ashley Gladstone,
Tommi Mäklin,
Gerry Tonkin-Hill,
Pekka Marttinen
et al.:
Basic reproduction number varies markedly between closely related pandemic Escherichia coli clones
Neil Zhang Nian Zhong MacAlasdair,
Anna Kaarina Pöntinen,
Clare Ling,
Sudaraka Mallawaarachchi,
Janjira Thaipadungpanit,
Francois H. Nosten
et al.:
Genetic population structure of Haemophilus influenzae at local and global scales
Juri Kuronen,
Jukka Corander,
Johan Pensar
:
Learning pairwise Markov network structures using correlation neighborhoods
Andrea Sylvia Winkler,
Christina Brux Mburu,
Hélène Carabin,
Carlos Goncalo Rolhas Fernandes Das Neves,
Barbara Häsler,
Jakob Zinsstag
et al.:
The Lancet One Health Commission: harnessing our interconnectedness for equitable, sustainable, and healthy socioecological systems
Theodor Anton Ross,
Jessin Janice,
Sergio Arredondo Alonso,
Iren Høyland Löhr,
Einar Holsbø,
Jukka Corander
et al.:
Enterococcus lactis is ecologically and genetically distinct from the major opportunistic pathogen Enterococcus faecium
Meng Wang,
Longyang Jin,
Ruobing Wang,
Qi Wang,
Shuyi Wang,
Xingyu Wu
et al.:
KpnK48 clone driving hypervirulent carbapenem-resistant Escherichia coli epidemics: Insights into its evolutionary trajectory similar to Klebsiella pneumoniae
Sergio Arredondo Alonso,
Anna Kaarina Pöntinen,
João Alves Gama,
Rebecca Ashley Gladstone,
Klaus Harms,
Gerry Tonkin-Hill
et al.:
Plasmid-driven strategies for clone success in Escherichia coli
Henri Pesonen,
Jukka Corander
:
Stratified distance space improves the efficiency of sequential samplers for approximate Bayesian computation
Owen Matthew Truscott Thomas,
Raquel Sá-Leão,
Hermínia de Lencastre,
Samuel Kaski,
Jukka Corander,
Henri Pesonen
:
Misspecification-robust likelihood-free inference in high dimensions
Marko Juhani Järvenpää,
Jukka Corander
:
Approximate Bayesian inference from noisy likelihoods with Gaussian process emulated MCMC
Petrus Mikkola,
Osvaldo A. Martin,
Suyog Chandramouli,
Marcelo Hartmann,
Oriol Abril Pla,
Owen Matthew Truscott Thomas
et al.:
Prior Knowledge Elicitation: The Past, Present, and Future
Jessica Kate Calland,
Maiju Pesonen,
Jai Mehat,
Ben Pascoe,
David J. Haydon,
Jose Lourenco
et al.:
Genomic tailoring of autogenous poultry vaccines to reduce Campylobacter from farm to fork
Anna Kaarina Pöntinen,
Rebecca Ashley Gladstone,
Henri Pesonen,
Maiju Pesonen,
Francois Pierre Alexandre Cleon,
Benjamin J Parcell
et al.:
Modulation of multidrug-resistant clone success in Escherichia coli populations: a longitudinal, multi-country, genomic and antibiotic usage cohort study
Aidan J. Taylor,
Koji Yahara,
Ben Pascoe,
Seungwon Ko,
Leonardos Mageiros,
Evangelos Mourkas
et al.:
Epistasis, core-genome disharmony, and adaptation in recombining bacteria
Julian A. Paganini,
Jesse J. Kerkvliet,
Lisa Vader,
Nienke L. Plantinga,
Rodrigo Meneses,
Jukka Corander
et al.:
PlasmidEC and gplas2: an optimized short-read approach to predict and reconstruct antibiotic resistance plasmids in Escherichia coli
Srijana Bastakoti,
Maiju Pesonen,
Clément Ajayi,
Kjersti Julin,
Jukka Corander,
Mona Susan Johannessen
et al.:
Co-culturing with Streptococcus anginosus alters Staphylococcus aureus transcriptome when exposed to tonsillar cells
Juri Kuronen,
Samuel T. Horsfield,
Anna Kaarina Pöntinen,
Sudaraka Mallawaarachchi,
Sergio Arredondo Alonso,
Harry Thorpe
et al.:
Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs
Sophie Belman,
Henri Pesonen,
Nicholas J. Croucher,
Stephen D. Bentley,
Jukka Corander
:
Estimating between-country migration in pneumococcal populations
Sudaraka Mallawa Arachchi,
Gerry Tonkin-Hill,
Anna Kaarina Pöntinen,
Jessica Kate Calland,
Rebecca Ashley Gladstone,
Sergio Arredondo Alonso
et al.:
Detecting co-selection through excess linkage disequilibrium in bacterial genomes
Sreymom Pol,
Teemu Kallonen,
Tommi Mäklin,
Poda Sar,
Jill Hopkins,
Sona Soeng
et al.:
Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing
Harry Thorpe,
Maiju Pesonen,
Marta Corbella,
Henri Pesonen,
Stefano Gaiarsa,
Christine J Boinett
et al.:
Pan-pathogen deep sequencing of nosocomial bacterial pathogens in Italy in spring 2020: a prospective cohort study
Kara K. Tsang,
Margaret M C Lam,
Ryan R. Wick,
Kelly L. Wyres,
Michael Bachman,
Stephen Baker
et al.:
Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae
Erik Štrumbelj,
Alexandre Bouchard-Côté,
Jukka Corander,
Andrew Gelman,
Håvard Rue,
Lawrence Murray
et al.:
Past, Present and Future of Software for Bayesian Inference
Tamim Khawaja,
Tommi Mäklin,
Teemu Kallonen,
Rebecca Ashley Gladstone,
Anna Kaarina Pöntinen,
Sointu Mero
et al.:
Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan
Ben Pascoe,
Georgina Futcher,
Johan Pensar,
Sion C. Bayliss,
Evangelos Mourkas,
Jessica Kate Calland
et al.:
Machine learning to attribute the source of Campylobacter infections in the United States: A retrospective analysis of national surveillance data
Ana P. Pereira,
Patrícia Antunes,
Paula Bierge,
Rob J.L. Willems,
Jukka Corander,
Teresa M. Coque
et al.:
Unraveling Enterococcus susceptibility to quaternary ammonium compounds: genes, phenotypes, and the impact of environmental conditions
Sergio Arredondo Alonso,
Rebecca Ashley Gladstone,
Anna Kaarina Pöntinen,
João Alves Gama,
Anita C. Schürch,
Val F. Lanza
et al.:
Mge-cluster: a reference-free approach for typing bacterial plasmids
Jessica Kate Calland,
Kaisa Haukka,
Stephen W Kpordze,
Atanyiwoen Brusah,
Marta Corbella,
Cristina Merla
et al.:
Population structure and antimicrobial resistance among Klebsiella isolates sampled from human, animal, and environmental sources in Ghana: a cross-sectional genomic One Health study
Christopher H. Connor,
Amanda Z. Zucoloto,
John T. Munnoch,
Ian-Ling Yu,
Jukka Corander,
Paul A. Hoskisson
et al.:
Multidrug-resistant E. coli encoding high genetic diversity in carbohydrate metabolism genes displace commensal E. coli from the intestinal tract
Chrispin Chaguza,
Anna Kaarina Pöntinen,
Janetta Top,
Sergio Arredondo Alonso,
Ana R. Freitas,
Carla Novais
et al.:
The population-level impact of Enterococcus faecalis genetics on intestinal colonization and extraintestinal infection
Zhirong Yang,
Yuwei Chen,
Denis Sedov,
Samuel Kaski,
Jukka Corander
:
Stochastic Cluster Embedding
Gerry Tonkin-Hill,
Jukka Corander,
Julian Parkhill
:
Challenges in prokaryote pangenomics
Gerry Tonkin-Hill,
Rebecca Ashley Gladstone,
Anna Kaarina Pöntinen,
Sergio Arredondo Alonso,
Stephen D. Bentley,
Jukka Corander
:
Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe
Ann E. Snaith,
Steven J. Dunn,
Robert A. Moran,
Paul N. Newton,
David A. B. Dance,
Viengmon Davong
et al.:
The highly diverse plasmid population found in Escherichia coli colonizing travellers to Laos and its role in antimicrobial resistance gene carriage
Umberto Picchini,
Umberto Simola,
Jukka Corander
:
Sequentially Guided MCMC Proposals for Synthetic Likelihoods and Correlated Synthetic Likelihoods
Andreia Rebelo,
Bárbara Duarte,
Carolina Ferreira,
Joana Mourão,
Sofia Ribeiro,
Ana R. Freitas
et al.:
Enterococcus spp. from chicken meat collected 20 years apart overcome multiple stresses occurring in the poultry production chain: Antibiotics, copper and acids
Greta Petazzoni,
Greta Bellinzona,
Cristina Merla,
Marta Corbella,
Vincenzina Monzillo,
Ørjan Samuelsen
et al.:
The COVID-19 Pandemic Sparked off a Large-Scale Outbreak of Carbapenem-Resistant Acinetobacter baumannii from the Endemic Strains at an Italian Hospital
The Tien Mai,
John A Lees,
Rebecca Ashley Gladstone,
Jukka Corander
:
Inferring the heritability of bacterial traits in the era of machine learning
Sergio Arredondo Alonso,
George Blundell-Hunter,
Zuyi Fu,
Rebecca Ashley Gladstone,
Alfred Fillol-Salom,
Jessica Loraine
et al.:
Evolutionary and functional history of the Escherichia coli K1 capsule
Tommi Mäklin,
Aurora Taira,
Sergio Arredondo Alonso,
Yan Shao,
Michael R Stratton,
Trevor D Lawley
et al.:
Geographical variation in the incidence of colorectal cancer and urinary tract cancer is associated with population exposure to colibactin-producing Escherichia coli
Kesorn Angchagun,
Phumrapee Boonklang,
Chalita Chomkatekaew,
Sukritpong Pakdeerat,
Gumphol Wongsuwan,
Premjit Amornchai
et al.:
BurkHostGEN: a study protocol for evaluating variations in the Burkholderia pseudomallei and host genomes associated with melioidosis infection
Srijana Bastakoti,
Maiju Pesonen,
Clément Ajayi,
Kjersti Julin,
Jukka Corander,
Mona Susan Johannessen
et al.:
Co-culturing with Streptococcus anginosus alters Staphylococcus aureus transcriptome when exposed to tonsillar cells
2023 ARKIV
Anne-Merethe Christiansen Hanssen,
Clément Ajayi,
Mona Susan Johannessen,
Kjersti Julin,
Maiju Pesonen,
Jukka Corander
et al.:
Co-culturing with Streptococcus anginosus alters Staphylococcus aureus transcriptome when exposed to tonsillar cells
2023 ARKIV
Srijana Bastakoti,
maiju Pesonen,
Clément Ajayi,
Kjersti Julin,
Mona Susan Johannessen,
Jukka Corander
et al.:
Co-culturing with Streptococcus anginosus alters Staphylococcus aureus transcriptome when exposed to tonsillar cells
2023 ARKIV
Srijana Bastakoti,
Maiju Pesonen,
Clément Ajayi,
Kjersti Julin,
Jukka Corander,
Mona Susan Johannessen
et al.:
Co-culturing with Streptococcus anginosus alters Staphylococcus aureus transcriptome when exposed to tonsillar cells
2023 ARKIV
The 50 latest publications is shown on this page. See all publications in NVA here →