autumn 2015

BIO-3018 Environmental Molecular Genetics - 20 stp

Last changed: 16.12.2015

The course is administrated by

Faculty of Biosciences, Fisheries and Economics

Campus

Tromsø |

Application deadline

Applicants from Nordic countries: 1 June for the autumn semester and 1 December for the spring semester. Concerns only admission to singular courses. Applicants from outside the Nordic countries: 1 October for the spring semester and 15 April for the autumn semester.
 

Type of course

Master course for biology students - principally aimed at MSc-students specializing in "Molecular Environmental Biology". The course is available as a singular course.
 

Admission requirements

The number of participants is limited to 10.

Local admission , application code 9371 - - Master`s level singular course.

Admission requires a Bachelor`s degree (180 ECTS) in biology or equivalent qualification in biology.

Recommended skills corresponding to courses BIO-2601 General Microbiology (10 stp)
BIO-2106 Microscopical imaging techniques (10 stp), BIO-2009 Green Biotechnology and Bioenergy (10 stp).

Course contents

The aim of this course is to give a thorough introduction to molecular genetic methods and bioinformatics used in modern biological research. The course will give a basis for advanced studies in different areas of biology and include practical exercises followed by computer analyses of own data sets. The students will isolate DNA and RNA from Arctic samples, and prepare samples for sequencing and bioinformatics in the first part of the course. The second part includes the study on the epigenetic regulation of gene expression in plants. The laboratory and computer work is running for four weeks and the results are discussed in plenum. The students have to write individual laboratory reports. The lectures will be closely connected to the practical problems to be solved in the laboratory. Selected articles from the scientific curriculum are topics for seminar presented by the students.

Recommended prerequisites

BIO-2009 Green Biotechnology and Bioenergy, BIO-2106 Microscopical imaging Techniques, BIO-2601 General microbiology

Objective of the course

Knowledge:

  • Theory of microbial ecology and epigenetics
  • Theory of gene and gene expression analyses
  • Critical consideration of scientific literature within the topics for the course
  • How to write a laboratory report
  • Critical assessment of own results

Skills:

  • Isolation of DNA and RNA from environmental samples
  • Preparation of samples for sequencing
  • Bioinformatics - analysis of sequencing results, sequence assemblies
  • Gene expression (qPCR), methylation status analysis
  • Present objectives, methods and results
  • Oral and written discussion of results

General competence:

  • Theory of environmental genetics
  • Experimental design
  • Molecular laboratory work
  • Evaluation of methods
  • Discussion of results
  • Presentation of results

Language of instruction


The language of instruction is English and all of the syllabus material is in English. Examination questions will be given in English, but may be answered either in English or a Scandinavian language.

Teaching methods

Lectures 12 hours, laboratory 60 hours during 4 weeks, seminars 16 hours

Assessment

Report (50%) and oral exam (50%). A graded scale of five marks from A to E for pass and F for fail.

Students require to attain a pass grade (A to E) in the laboratory report in order to be able to take the oral examination. There will be a re-sit examination for students that did not pass the previous ordinary examination.
 

Schedule

Course overlap

BIO-3137 Applied Molecular Genetics 10 stp
BIO-3134 Applied Molecular Genetics 20 stp

Recommended reading/syllabus

Scientific articles and laboratory reports.

Syllabus and reading list will be announced prior to course start.

Lectures Autumn 2015
Introduction 25.08 at 08.30, D-112 NFH.
Lectures prof. Mette Marianne Svenning
forsk.sjef Laura Elina Jaakola
Seminars prof. Mette Marianne Svenning
forsk.sjef Laura Elina Jaakola


Contact
Mette-Svenning

Mette Marianne Svenning


Professor
Phone: +4777644432
Mobile: 91740426 mette.svenning@uit.no

personkort.JPG

Andreassen, Siv


Student advisor
Phone: +4777646381 siv.andreassen@uit.no