Publications
2022
| Zolotarov, G., Fromm, B., Legnini, I., Ayoub, S., Polese, G., Maselli, V., Chabot, P. J., Vinther, J., Styfhals, R., Seuntjens, E., Cosmo, A. D., Peterson, K. J., & Rajewsky, N. (2022). "MicroRNAs are deeply linked to the emergence of the complex octopus brain". Science Advances, 8(47), eadd9938. | November |
| Fromm, B., & Sorger, T. (2022). "Rapid Adaption of Cellular Metabolic Rate to the microRNA Complements of Mammals". In bioRxiv (p. 2022.11.24.517858). | November |
| Umu, S. U., Trondsen, H., Paynter, V. M., Buschmann, T., Rounge, T. B., Peterson, K. J., & Fromm, B. (2022). "Accurate microRNA annotation of animal genomes using trained covariance models of curated microRNA complements in MirMachine". In bioRxiv (p. 2022.11.23.517654). | November |
| Jenike, A. E., Jenike, K. M., Peterson, K. J., Fromm, B., & Halushka, M. K. (2022). "Direct observation of the evolution of cell-type specific microRNA expression signatures supports the hematopoietic origin model of endothelial cells". In bioRxiv (p. 2022.11.23.517662). | November |
| Fromm, B., Patil, AH & Halushka, MK, 2022. Comment on " A Novel Circulating MicroRNA for the Detection of Acute Myocarditis ". The New England Journal of Medicine , 387 (13), pp.1240-1240. | September |
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Schiffer, P. H., Natsidis, P., Leite, D. J., Robertson, H., Lapraz, F., Marlétaz, F., Fromm, B., Baudry, L., Simpson, F., Høye, E., Zakrzewski, A.-C., Kapli, P., Hoff, K. J., Mueller, S., Marbouty, M., Marlow, H., Copley, R. R., Koszul, R., Sarkies, P., & Telford, M. J. (2022)." The slowly evolving genome of the xenacoelomorph worm Xenoturbella bocki ". In bioRxiv (p. 2022.06.24.497508). |
June |
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Aparicio-Puerta, E., Gómez-Martín, C., Giannoukakos, S., Medina, J. M., Scheepbouwer, C., García-Moreno, A., Carmona-Saez, P., Fromm, B., Pegtel, M., Keller, A., Marchal, J. A., & Hackenberg, M. (2022)." sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms ". Nucleic Acids Research. |
May |
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Fromm, B., Zhong, X., Tarbier, M., Friedländer, M. R., & Hackenberg, M. (2022)." The Limits of Human MicroRNA Annotation Have Been Met ". RNA , 28(6), 781–785. |
March |
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Høye, E., Fromm, B., Böttger, P. H. M., Domanska, D., Torgunrud, A., Lund-Andersen, C., Abrahamsen, T. W., Fretland, Å. A., Dagenborg, V. J., Lorenz, S., Edwin, B., Hovig, E., & Flatmark, K. (2022). "A Comprehensive Framework for Analysis of MicroRNA Sequencing Data in Metastatic Colorectal Cancer " NAR Cancer, 4(1), zcab051. |
March |
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Zolotarov, G., Fromm, B., Legnini, I., Ayoub, S., Polese, G., Maselli, V., Chabot, P. J., Vinther, J., Styfhals, R., Seuntjens, E., Di Cosmo, A., Peterson, K. J., & Rajewsky, N. (2022). “MicroRNAs Are Deeply Linked to the Emergence of the Complex Octopus Brain”. In bioRxiv (p. 2022.02.15.480520). |
February |
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Peterson, K. J., Beavan, A., Chabot, P. J., McPeek, M. A., Pisani, D., Fromm, B., & Simakov, O. (2022).“MicroRNAs as Indicators into the Causes and Consequences of Whole-Genome Duplication Events”. Molecular Biology and Evolution, 39(1). |
January |
2021
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Patil, A. H., Halushka, M. K., & Fromm, B. (2021)." No evidence of paralogous loci or new bona fide microRNAs in telomere to telomere (T2T) genomic data ". In bioRxiv (p. 2021.12.09.471935). |
December |
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Kang, W., Fromm, B., Houben, A. J., Høye, E., Bezdan, D., Arnan, C., Thrane, K., Asp, M., Johnson, R., Biryukova, I., & Friedländer, M. R. (2021). “ MapToCleave: High-Throughput Profiling of MicroRNA Biogenesis in Living Cells ” . Cell Reports, 37(7), 110015. |
November |